FBA & FVA
Flux file for x-axis:
Upload FBA, MOMA, FVA, or MFM file for the scatterplot
Flux file for y-axis:
Important! Upload a file of the same type as for the x axis!
Which method did you used to create the uploaded files?
If an objective function (e.g. biomass) is given,
flux changes that are based on difference in the objective function
will be considered as not significant.
Maximum label length, longer labels will be abbreviated
IDs in names:
True if BRENDA, KEGG, or MetaCyc IDs are in reaction names
Lower cutoff value for the plot
Color for insignificant data points
Color for significant data points
Threshold for significance calculation
Show the grid of the plot
Title for the plot; leave empty to disable the title
choose which errorbar to show (only FVA)
Show data point labels
choose which point labels to show
NOTE: showing all labels might take some time...
The scatterplot script with a greater functionality is also included in the
free software toolbox metano
. See the metano
for further information.
Other tools from our Department:
BrEPS (Enzyme Pattern Search)